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Publications

Cooper and Walls et al (2013). The Plant Ontology as a Tool for Comparative Plant Anatomy and Genomic Analyses. Plant and Cell Physiology 54:e1

Lens et al. (2012). An extension of the Plant Ontology project supporting wood anatomy and development research. IAWA Journal 33:113.

Walls et al (2012). A plant disease extension of the Infectious Disease Ontology.''' In: Proceedings 3rd International Conference on Biomedical Ontology, Medical University of Graz, Graz, Austria.

Arnaud, et al (2012).Towards a Reference Plant Trait Ontology for Modeling Knowledge of Plant Traits and Phenotypes. Proceedings of the International Conference on Knowledge Engineering and Ontology Development. Barcelona, Spain, pp 220-225

Walls et al (2012). Ontologies as integrative tools for plant science. American Journal of Botany 99:1263-1275 (special invited paper).

Plant Structure Ontology (PSO) - A morphological and anatomicalontology of flowering plants. In Anatomy Ontologies forBioinformatics, Springer, 2008, p 27-42. [Book]

The Plant Ontology Database: a community resource for plantstructure and development stages controlled vocabulary andannotations.   [Abstract]  [FullText]
NucleicAcid Research, 2008, 36(Database issue):D449-D454

The Plant Structure Ontology, a unified vocabulary of anatomy andmorphology of a flowering plant.    [Abstract]  [FullText]
Plant Physiology,2007, 143: 587-599  

Whole-plant growth stage ontology for angiosperms and itsapplication in plant biology.  [Abstract]  [FullText]
Plant Physiology, 2006,142: 414-428

Plant Ontology (PO): a controlled vocabulary of plant structuresandgrowth stages.  [Abstract]  [FullText]
Comparativeand Functional Genomics, 2005, Volume 6(7-8), 388 - 397

The Gene Ontology (GO) database and informaticsresource.   [Abstract] [FullText]
Nucleic Acids Research,2004, Vol 32: D258-D261.

Bio-ontologies-fast and furious.   [FullText]
Nature Biotechnology, 2004,Vol 22(6): 773-774.

Functional annotation of the Arabidopsis genome using controlledvocabularies.   [Abstract] [FullText]
Plant Physiology, 2004,Vol 135(2): 745-755.

Ontologies in biology: design, applications and future challenges.   [Abstract] [FullText]
Nature Reviews Genetics2004, Vol 5(3): 213-222.

Zea mays ontology – a database of international terms
Trends in Plant Science, 2003, 8(11): 517-520 [Abstract]

Ontologies: Formalising biological knowledge forbioinformatics.   [Abstract] [FullText]
Bioessays,2003, Vol 25(5): 501-506.

Extension and Integration of the Gene Ontology (GO): Combining GOVocabularies With External Vocabularies.    [Abstract] [Full Text]
Genome research 2002,12:1982-1991.

The Plant OntologyTM Consortium and PlantOntologies  [Abstract] [FullText]
Comparativeand Functional Genomics, 2002, Vol 3(2), 137-142

Gramene: development and integration of trait and gene ontologiesfor rice  [Abstract] [FullText]
Comparativeand Functional Genomics, 2002, Vol 3(2), 132-136

Creating the gene ontology resource: design andimplementation.   [Abstract] [Full Text]
Genome Research, 2001, Vol11(8), 1425-1433

Gene Ontology: tool for the unification of biology.   [Abstract] [FullText]
Nature Genetics, 2000, 25:25-29

On the representation of gene function in genetic databases. byMichael Ashburner, ISMB 1998.   [HTML]
 


  

Last modified: Mon May 13 14:00:47 2013

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